Sustained MYB activity drives emergent enhancer activation and precise enhancer-promoter interactions
Sustained MYB activity drives emergent enhancer activation and precise enhancer-promoter interactions
Lau, I.-J.; Harman, J. R.; Smith, A. L.; Denny, N.; Jackson, N. E.; Hamley, J. C.; Vyas, P.; Davies, J. O. J.; Hughes, J. R.; Crump, N. T.; Milne, T. A.
AbstractTranscription factors (TFs) are key effectors of enhancer activity. MYB is a critical hematopoietic TF that is frequently dysregulated in cancer. Despite its well-established role, the exact mechanisms by which MYB influences enhancer function and the specific stages of enhancer activation at which it operates remain poorly understood. Using high resolution Micro-Capture-C, we show that upon MYB degradation, highly defined enhancer-promoter interactions at specific MYB binding sites are lost. Loss of these interactions, together with other hallmarks of enhancer activity (reduced H3 lysine-27 acetylation and enhancer RNA transcription) correlates with significant downregulation of target gene expression in leukemia, indicating that MYB mediates transcription activation via maintenance of enhancer function. When anchored to DNA within a gene desert region that is devoid of histone marks and active transcription, the MYB transactivation domain is sufficient and necessary for the nucleation of an enhancer-like region. This results in the activation of transcription from distal cryptic elements and the establishment of long-range chromatin interactions up to 400 kb away from the anchor point. Together, these results indicate that MYB activity alone is sufficient to induce long-range interactions and transcription, achieving this through highly precise enhancer-promoter crosstalk.