Bioinformatics

Large Scale Cell Painting Guided Compound Selection Reveals Activity Cliffs and Functional Relationships

Large Scale Cell Painting Guided Compound Sele...

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librarian
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acmgscaler: An R package and Colab for standardised gene-level variant effect score calibration within the ACMG/AMP framework

acmgscaler: An R package and Colab for standar...

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librarian
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From Movement to METs: A Validation of ActTrust(R) for Energy Expenditure Estimation and Physical Activity Classification in Young Adults

From Movement to METs: A Validation of ActTrus...

Bioinformatics
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librarian
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Accelerate the discovery of genetic variants in mitochondrial diseases with VIOLA: Variant PrIOritization using Latent space

Accelerate the discovery of genetic variants i...

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librarian
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Riemann-GNN: Causal Reasoning on Hyperbolic Riemannian Manifolds for Interpretable Drug-Disease Prediction

Riemann-GNN: Causal Reasoning on Hyperbolic Ri...

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Kaminari: a resource-frugal index for approximate colored k-mer queries

Kaminari: a resource-frugal index for approxim...

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librarian
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CROCKETA: An automated framework for comprehensive multi-omic analysis of gene expression and clonotype immune repertoire at a single-cell level

CROCKETA: An automated framework for comprehen...

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Transcriptomic Signatures of Neuroinflammation and Adaptive Immunity in the Human SCG During Cardiac Disease: A Bulk RNA-seq Reanalysis

Transcriptomic Signatures of Neuroinflammation...

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Nourelden Rihan
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Rapid and accurate protein structure database search using inverse folding model and contrastive learning

Rapid and accurate protein structure database ...

Bioinformatics
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librarian
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Interpreting biochemical text with language models:a machine learning framework for reaction extraction and cheminformatic validation

Interpreting biochemical text with language mo...

Bioinformatics
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librarian
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Benchmarking Spectral Library and Database Search Approaches for Metaproteomics Using a Ground-Truth Microbiome Dataset

Benchmarking Spectral Library and Database Sea...

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Pratik Jagtap
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Medical Images as Biomarkers of Ageing - From Global and Local Patterns to Digital Twins

Medical Images as Biomarkers of Ageing - From ...

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Tamara Mueller
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Assessing Large Language Model Alignment Towards Radio-logical Myths and Misconceptions

Assessing Large Language Model Alignment Towar...

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Christopher West
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Multiscale Segmentation using Hierarchical Phase-contrast Tomography and Deep Learning

Multiscale Segmentation using Hierarchical Pha...

Bioinformatics
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librarian
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Triad-LMF: A Hierarchical Low-Rank Multimodal Fusion Framework for Robust Cancer Subtype Classification Using Multi-Omics Data

Triad-LMF: A Hierarchical Low-Rank Multimodal ...

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Zhuangzhuang Ren
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Fast, flexible gene cluster family delineation with IGUA

Fast, flexible gene cluster family delineation...

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librarian
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BEstimate: a computational tool for the design and interpretation of CRISPR base editing experiments

BEstimate: a computational tool for the design...

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Chromatin interaction-based annotation of distal cis-regulatory elements reveals highly dynamic promoter-enhancer interactions in lymphocyte development

Chromatin interaction-based annotation of dist...

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librarian
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difFUBAR: Scalable Bayesian comparison of adaptive evolution

difFUBAR: Scalable Bayesian comparison of adap...

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librarian
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Immune Spatial Organization Predicts Metastasis Risk in Aggressive Localized Prostate Cancer

Immune Spatial Organization Predicts Metastasi...

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librarian
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CPP2Vec: a Representation Learning Approach for Cell-Penetrating Peptides Prediction

CPP2Vec: a Representation Learning Approach fo...

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librarian
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SWANS: A highly configurable analysis pipeline for single-cell and single-nuclei RNA-sequencing data

SWANS: A highly configurable analysis pipeline...

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librarian
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InstaNovo-P: A de novo peptide sequencing model for phosphoproteomics

InstaNovo-P: A de novo peptide sequencing mode...

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librarian
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Amira: gene-space de Bruijn graphs to improve the detection of AMR genes from bacterial long reads

Amira: gene-space de Bruijn graphs to improve ...

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Daniel Anderson
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Snekmer Learn/Apply: A kmer-based vector similarity approach to proteinclassification suitable for metagenomic datasets

Snekmer Learn/Apply: A kmer-based vector simil...

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librarian
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eSPred: Explainable scRNA-seq Prediction via Customized Foundation Models and Pathway-Aware Fine-tuning

eSPred: Explainable scRNA-seq Prediction via C...

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librarian
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Macroscopic Analyses of RNA-Seq Data to Reveal Chromatin Modifications in Aging and Disease

Macroscopic Analyses of RNA-Seq Data to Reveal...

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Achal Mahajan
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DNA methylation networks during pig fetal development: a joint fused ridge estimation approach

DNA methylation networks during pig fetal deve...

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Karolina Wachala
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Aggregating multimodal cancer data across unaligned embedding spaces maintains tumor of origin signal

Aggregating multimodal cancer data across unal...

Bioinformatics
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librarian
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fMRIPrep Lifespan: Extending A Robust Pipeline for Functional MRI Preprocessing to Developmental Neuroimaging

fMRIPrep Lifespan: Extending A Robust Pipeline...

Bioinformatics
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librarian
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Integrative analysis across metagenomic taxonomic classifiers: A case study of the gut microbiome in aging and longevity

Integrative analysis across metagenomic taxono...

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librarian
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Estimation of substitution and indel rates via k-mer statistics

Estimation of substitution and indel rates via...

Bioinformatics
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librarian
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